Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2175546 chr2:107233212 A/G 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs2176029 chr3:80599924 A/C 0.000162 178 19.53 24.03 27.4 KM Plot
PCPG rs2181787 chr13:37534781 G/C 0.00031 177 4.17 24.23 25.87 KM Plot
PCPG rs2186157 chr13:37572948 A/G 0.000337 174 4.17 24.47 25.87 KM Plot
PCPG rs2190806 chr16:89841055 A/G 0.000181 176 25.87 20.2 36.37 KM Plot
PCPG rs2190808 chr16:89840856 C/T 0.000181 176 25.87 20.2 36.37 KM Plot
PCPG rs2206816 chr20:5984414 G/T 0 175 25.53 25.7 2.93 KM Plot
PCPG rs2208023 chr22:50249983 A/G 0.000156 178 25.47 20.17 15.18 KM Plot
PCPG rs2209380 chr13:48419323 T/G 5.83E-5 177 2.93 27.23 25.2 KM Plot
PCPG rs2211618 chr13:37645955 A/C 0.00034 176 4.17 22.22 25.97 KM Plot
PCPG rs2224379 chr6:26507434 A/G 6.12E-7 178 10.68 32.6 24.53 KM Plot
PCPG rs2228479 chr16:89985940 G/A 0.000183 174 25.87 20.2 36.37 KM Plot
PCPG rs2235488 chr16:1731306 G/T 6.07E-5 174 25.47 18.75 19.83 KM Plot
PCPG rs2238527 chr16:89840708 C/A 0.000181 176 25.87 20.2 36.37 KM Plot
PCPG rs2238530 chr16:89856001 C/T 0.000159 177 25.87 20.37 36.37 KM Plot